rs8275032 SNP Detail

Summary

• ID
  rs8275032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:45094681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                             TGGgga
  anggaaaaag gaaataaggg aggtaggcag ngnggaaaga anggaggcng gcaggcacaa
  aggaaggaag gnaggaagna nggnaggnag gnaggaCGGC AGGCAGAGAG GTTGCTGGCG
  TGAGGTGACA GCTTCCTATG GCCCNGATTG AGTACCTGTC ATAGCCCATC TGTCTGCAGG
  CTGTCTTGGC CAGTGCTTCT GTGAAGTTGT CGAAACAGAC TGAGGCCCAG GTCCCTGTGG
  CTGCATCCAG CACCTGCAGG GTGGATCTGT CCTTGGAGAG CCGGACTAGG AGGGAAGGNG
  CCTGGGTCAG CTGGAGGGTA NGGCCACTTT ANCCAAGACC CTTGGAACAT GNCATGAGAC
  Y
  AGCCCCCTCC CTTGCCGCTG CTCCCCAACC CAGAACTGAG NACATGTTCA ACCTCAAGGG
  AAGTTCTTCC AGTTGACTAG AGCCTAATTT GGANGGCAGC TACGGGAAAA CTTGACCAGC
  TGCCCAGGGA CAACGACTGA CAGCCTCTCT TTCTGCTCAG ATAAGTATCA GCTTCNATGA
  CCACTGACAA AATTGCTTTA CCATGGCC                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
ss12772325	Tmprss4_JC8223_11	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
rs8275032					SNP	C	C	C	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45094681 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57797	predicted gene, 57797			within coordinates
Rr677858	regulatory region 677858			1309 bp distal
Rr677859	regulatory region 677859			520 bp distal
Smim35	small integral membrane protein 35			Intron
				Noncoding-Transcript-Variant
Tmprss4	transmembrane protease, serine 4			Intron
				Noncoding-Transcript-Variant