rs8275143 SNP Detail

Summary

• ID
  rs8275143
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:49013260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCGTTCCT TTTTGGCCTT
  CTTTTAGTTG ACTGGGGAAG GTGCTCTAGG GTAGATGTCC CTAACCTTGG GTCATCTACC
  ATAAGAACCA TCTCTTCCCT TCAGTTCTCT GGCCACCATA ATATCAGTAA TCTAAGCGAG
  TGATACTAGA GAAAGAGTTC TATATTCAGC ATCTCATTTG GTTTGAACCT CAACACTGTG
  R
  GGTGAGTATT ACGACTCTCC TTTCACAGGG AGGCTGAGTG GGAGAACTGT ATTCTGGAGA
  GATTTGACTC TAAAGCCTGT GCTATCGAAT TGATGCATCA GAGGGATCCA TGAACGGCAG
  ACTGGAGGAG AGCACCCCAC TCTAGTGCCT GCTTCCCTGG TGCCCCTTGG CTTCTCCTTT
  TAAGAGACAT GGCTCCAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	SPRET/EiJ
ss12772436	Tmprss5_JC8236_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	SPRET/EiJ
rs8275143					SNP	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:49013260 () rs orientation: forward

Symbol	Name	Function Class
Rr678512	regulatory region 678512	340 bp proximal
Tmprss5	transmembrane protease, serine 5 (spinesin)	734 bp upstream
Tssr85008	transcription start site region 85008	760 bp upstream