rs8275146 SNP Detail

Summary

• ID
  rs8275146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:49013416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTATATT CAGCATCTCA
  TTTGGTTTGA ACCTCAACAC TGTGAGGTGA GTATTACGAC TCTCCTTTCA CAGGGAGGCT
  GAGTGGGAGA ACTGTATTCT GGAGAGATTT GACTCTAAAG CCTGTGCTAT CGAATTGATG
  CATCAGAGGG ATCCATGAAC GGCAGACTGG AGGAGAGCAC CCCACTCTAG TGCCTGCTTC
  Y
  CTGGTGCCCC TTGGCTTCTC CTTTTAAGAG ACATGGCTCC AGGTGTGTCC TGATCCAGCC
  CGGGATCGGC TGCATTATCT TGAACACTGA AACAAGATCG CACCAATGGC TACTGGATCC
  CAGGGGTGAA CTGGGTGAGG TGGCCTCACT TCCTAGCAAT CAGGAGAAAG GTGCACCATG
  GATACCTCAT GGTCATTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
ss12772439	Tmprss5_JC8236_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
rs8275146					SNP	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:49013416 () rs orientation: forward

Symbol	Name	Function Class
Rr678512	regulatory region 678512	184 bp proximal
Tmprss5	transmembrane protease, serine 5 (spinesin)	578 bp upstream
Tssr85008	transcription start site region 85008	604 bp upstream