rs8275147 SNP Detail

Summary

• ID
  rs8275147
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:49013540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTATCGAA TTGATGCATC
  AGAGGGATCC ATGAACGGCA GACTGGAGGA GAGCACCCCA CTCTAGTGCC TGCTTCCCTG
  GTGCCCCTTG GCTTCTCCTT TTAAGAGACA TGGCTCCAGG TGTGTCCTGA TCCAGCCCGG
  GATCGGCTGC ATTATCTTGA ACACTGAAAC AAGATCGCAC CAATGGCTAC TGGATCCCAG
  R
  GGTGAACTGG GTGAGGTGGC CTCACTTCCT AGCAATCAGG AGAAAGGTGC ACCATGGATA
  CCTCATGGTC ATTGTCAGCT CTAACATGGT GACAGCCTGA GACTGCTGGG AAGCTTCCAT
  AGAACTCAGA GACATTTCCA CACATGCTAA TATCTATCAC TCTTTAATGC AGCCCTGTCA
  GCAAGAAGGG GAACTGTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
ss12772440	Tmprss5_JC8236_5	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	CAST/EiJ	SPRET/EiJ
rs8275147					SNP	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:49013540 () rs orientation: forward

Symbol	Name	Function Class
Rr678512	regulatory region 678512	60 bp proximal
Tmprss5	transmembrane protease, serine 5 (spinesin)	454 bp upstream
Tssr85008	transcription start site region 85008	480 bp upstream