rs8275153 SNP Detail

Summary

• ID
  rs8275153
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:49014612 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                      aa ngngngaaag
  agagngagag agagagagag agagaaagaa agaaagaaag aaagaaagaa agaaagaaag
  aaagaaagaa agaaagaaag aaagaaagaa agaaaggaag gaagnaagna agnaagnaag
  naagtaagta nggaaggaag gaaggaagga aggaaCCaag gaaccaagga accaaggaan
  S
  aaggaannaa ggaaccaagg aaccaaagaa ccaaggaagg aaaggaagAG AAGAATCAAG
  ATAGGTAGCA CTTTCTACAC ACACACAGGC TTCCCTCTTG TCTTAATATC CAAGACATTA
  GACTTCAAGC CCAGCCTCTC ACCTAATCAC CTTGTCTCAN GCACTGCCCN GCCTCAAAAT
  ACAACCTGCC CAAACTCATG CTATAGCCTG AAAACTCAGG CCTCCGATGG AAAGACATCT
  CTTTGCTNTA CTAAGTAGGA GTCCATTTTA ATGCTTTGCT CAGTACAGCC ATGTGTAAAC
  T                                                                
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	LG/J	LP/J	SM/J	SPRET/EiJ
ss12772446	Tmprss5_JC8237_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C				G
ss24755141	Tmprss5_JC8237_7	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	LG/J	LP/J	SM/J	SPRET/EiJ
rs8275153					SNP	C	C	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:49014612 () rs orientation: reverse

Symbol	Name	Function Class
Rr678512	regulatory region 678512	481 bp distal
Tmprss5	transmembrane protease, serine 5 (spinesin)	within coordinates
Tssr85008	transcription start site region 85008	560 bp downstream