rs8275155 SNP Detail

Summary

• ID
  rs8275155
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:49014604 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AGAGAAAGAG AGAAAGAGAG
  AAAGAGAGAA AGAGGGAAAG AGAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGAAAGAAAG
  AAAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGGAAGGAAG GAAGGAAGGA AGGAAGGAAG
  GAAGGAAGGA AGGAAGGAAG GAAGGAACCA AGGAACCAAG GAACCAAGGA ACCAAGGAAC
  S
  AAGGAACCAA GGAACCAAAG AACCAAGGAA GGAAAGGAAG AGAAGAATCA AGATAGGTAG
  CACTTTCTAC ACACACACAG GCTTCCCTCT TGTCTTAATA TCCAAGACAT TAGACTTCAA
  GCCCAGCCTC TCACCTAATC ACCTTGTCTC ATGCACTGCC CCGCCTCAAA ATACAACCTG
  CCCAAACTCA TGCTATAGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	LG/J	LP/J	SM/J	SPRET/EiJ
ss12772448	Tmprss5_JC8237_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C				G
ss24755143	Tmprss5_JC8237_9	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	LG/J	LP/J	SM/J	SPRET/EiJ
rs8275155					SNP	C	C	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:49014604 () rs orientation: reverse

Symbol	Name	Function Class
Rr678512	regulatory region 678512	473 bp distal
Tmprss5	transmembrane protease, serine 5 (spinesin)	within coordinates
Tssr85008	transcription start site region 85008	552 bp downstream