rs8275156 SNP Detail

Summary

• ID
  rs8275156
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:49014452 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCTCT CACCTAATCA CCTTGTCTCA
  K
  GCACTGCCCC GCCTCAAAAT ACAAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	LG/J	LP/J	SM/J	SPRET/EiJ
ss12772449	Tmprss5_JC8237_5	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T				G
ss24755144	Tmprss5_JC8237_10	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	LG/J	LP/J	SM/J	SPRET/EiJ
rs8275156					SNP	T	T	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:49014452 () rs orientation: reverse

Symbol	Name	Function Class
Rr678512	regulatory region 678512	321 bp distal
Tmprss5	transmembrane protease, serine 5 (spinesin)	within coordinates
Tssr85008	transcription start site region 85008	400 bp downstream