rs8275256 SNP Detail

Summary

• ID
  rs8275256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:49014172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGACAAG GGGAGGGGCT
  ATGTGTGAAC CAGGAAGACT TCATCCTCCA ACCACACTGG CTGGGCTGTT GAATCAATCC
  TGACATGAGG ACAGGAGCCT CACCCTGCCC AGCAGAACTT ACTGCCTTAT ATCAGTGCAG
  CTGACTCATA TGGTAAGGTG ACGCCCCTGC CATCCCTCCA GTCCTGCTCA CCCTCTACCC
  Y
  GTGGGATGCA AGGTTGTTAG AAGAGCCTCT TCTGGCAGCT CTGGGATAGG AATTGCATCC
  TAGCATGAGC TATGAAGCTA TGAAGTTTTC TCCAGAGGAT GCCTTTCTCT TGCCATCGCT
  ACTCTGGGCT GATAAAGCAG TTTACACATG GCTGTACTGA GCAAAGCATT AAAATGGACT
  CCTACTTAGT ATAGCAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12772549	Tmprss5_JC8250_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8275256					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:49014172 () rs orientation: forward

Symbol	Name	Function Class
Rr678512	regulatory region 678512	41 bp distal
Tmprss5	transmembrane protease, serine 5 (spinesin)	within coordinates
Tssr85008	transcription start site region 85008	120 bp downstream