rs8275257 SNP Detail

Summary

• ID
  rs8275257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:49014198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCAGGAA GACTTCATCC
  TCCAACCACA CTGGCTGGGC TGTTGAATCA ATCCTGACAT GAGGACAGGA GCCTCACCCT
  GCCCAGCAGA ACTTACTGCC TTATATCAGT GCAGCTGACT CATATGGTAA GGTGACGCCC
  CTGCCATCCC TCCAGTCCTG CTCACCCTCT ACCCTGTGGG ATGCAAGGTT GTTAGAAGAG
  Y
  CTCTTCTGGC AGCTCTGGGA TAGGAATTGC ATCCTAGCAT GAGCTATGAA GCTATGAAGT
  TTTCTCCAGA GGATGCCTTT CTCTTGCCAT CGCTACTCTG GGCTGATAAA GCAGTTTACA
  CATGGCTGTA CTGAGCAAAG CATTAAAATG GACTCCTACT TAGTATAGCA AAGAGATGTC
  TTTCCATCGG AGGCCTGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	LP/J	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12772550	Tmprss5_JC8250_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	T	C			C	C		C
ss24748326	Tmprss5_JC8250_6	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	LP/J	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8275257					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:49014198 () rs orientation: forward

Symbol	Name	Function Class
Rr678512	regulatory region 678512	67 bp distal
Tmprss5	transmembrane protease, serine 5 (spinesin)	within coordinates
Tssr85008	transcription start site region 85008	146 bp downstream