rs8275258 SNP Detail

Summary

• ID
  rs8275258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:49014219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACCACAC TGGCTGGGCT
  GTTGAATCAA TCCTGACATG AGGACAGGAG CCTCACCCTG CCCAGCAGAA CTTACTGCCT
  TATATCAGTG CAGCTGACTC ATATGGTAAG GTGACGCCCC TGCCATCCCT CCAGTCCTGC
  TCACCCTCTA CCCTGTGGGA TGCAAGGTTG TTAGAAGAGC CTCTTCTGGC AGCTCTGGGA
  Y
  AGGAATTGCA TCCTAGCATG AGCTATGAAG CTATGAAGTT TTCTCCAGAG GATGCCTTTC
  TCTTGCCATC GCTACTCTGG GCTGATAAAG CAGTTTACAC ATGGCTGTAC TGAGCAAAGC
  ATTAAAATGG ACTCCTACTT AGTATAGCAA AGAGATGTCT TTCCATCGGA GGCCTGAGTT
  TTCAGGCTAT AGCATGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12772551	Tmprss5_JC8250_5	ROCHEBIO	RPAMM	f	SNP	T		T		T	T	T	T	T	T						T		T	T				C
ss24748327	Tmprss5_JC8250_7	ROCHEBIO	RPAMM	f	SNP	T		T		T	T	T	T	T	T			T	T		T		T	T			T	C
ss52014465	NES15032376	PERLEGEN	MM_PANEL2	f	SNP		T	T	T		T		T	T	T	T	C			C		T			T	T			T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8275258					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52014465	NES15032376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:49014219 () rs orientation: forward

Symbol	Name	Function Class
Rr678512	regulatory region 678512	88 bp distal
Tmprss5	transmembrane protease, serine 5 (spinesin)	within coordinates
Tssr85008	transcription start site region 85008	167 bp downstream