rs8275342 SNP Detail

Summary

• ID
  rs8275342
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:49015766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTCTTC TTTTCTTCCT
  CTTCCTCCTC CCCCTCCTTC TTCTTTTTAA ATTAGGCTTT GTTGTTGTTG TTGTTGCCAA
  GGCTGTCCTT GTGGATCTCC TCTTCCACCT CCAGAGTGTT GTGATTTCAG GCATCTTCCA
  TTACATCCAG CTAGAATCTA GTTTTGAGAT GCTATATTTA TTCTATTGGA TTACAAATTC
  M
  TTGAGGAAGT ATTTACAGCC TATATGCATT TCTTATTGAT ATTATTATAA TTAACATGTA
  GCTTGTGTTT TATCCATAAA GCCCTTATTT TCCTCTATTC CTTCTTGTCT TCACCCCTCC
  TCCCTCCCTC CCTCCTTCCT ATTCCCCTCC CTGTCCCTCT CTTCCTTTCT TCTTTCTCCT
  TCCTTACTTC CATGCCTTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	LG/J	LP/J	SM/J	SPRET/EiJ
ss12772635	Tmprss5_JC8262_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A				C
ss24753725	Tmprss5_JC8262_4	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	LG/J	LP/J	SM/J	SPRET/EiJ
rs8275342					SNP	A	A	A	A	A	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:49015766 () rs orientation: forward

Symbol	Name	Function Class
Rr678512	regulatory region 678512	1635 bp distal
Tmprss5	transmembrane protease, serine 5 (spinesin)	within coordinates
Tssr85008	transcription start site region 85008	1714 bp downstream