rs8275866 SNP Detail

Summary

• ID
  rs8275866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:43973482 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTCCC AGAGCTGTCC GGGCCGCCCC
  R
  GCCCGTCCGG TCCCCGCCTT GTTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12773172	Tpp2_JC8550_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8275866					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:43973482 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi222	CpG island 222	within coordinates
Gm57117	predicted gene, 57117	within coordinates
Rr29382	regulatory region 29382	within coordinates
Rr366891	regulatory region 366891	404 bp downstream
Tpp2	tripeptidyl peptidase II	within coordinates
Tssr6550	transcription start site region 6550	696 bp downstream
Tssr6551	transcription start site region 6551	628 bp downstream
Tssr6552	transcription start site region 6552	246 bp downstream
Tssr6553	transcription start site region 6553	435 bp upstream
Tssr11507	transcription start site region 11507	408 bp upstream