rs8277602 SNP Detail

Summary

• ID
  rs8277602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:92546437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAAGGTG CACGAATGAG
  TCACAAGAAC AGAATTTTCT GCCTCCCTAG GATTCACAGA ATGTCCATAA ACTATCAAAA
  CTCAATTTAA AGGGTCTTGC CCCTAGCTTT TGAGTTGGGC GTTTTCAGCC CCTATCTATA
  GTACAATTCC CCTCACAAAA AAGCATGTAC ATGTCCAAAT GCTCAGAGTG GGCTCCCTGA
  Y
  TGATTCATCT AGGGGGCTAA TTAAGATGCA GCCAAGCTAT GTCCATGCTT TAGTGAACAT
  CAGTACTCAA GCAAGTTTCA CACAACCTGA TTAAAATTGA CTCAAAATGT CTTACTTCAG
  TAATCACTTA GATAGAATGA ATTTTACATT AGTGGGATCA AGCATACACC AGGCCTCAGT
  GGAAATGAAA AGGGCTTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12774937	Pola1_AN4742_4	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T			T	T	T		C
ss24749225	Pola1_AN4742_6	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8277602					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:92546437 () rs orientation: forward

Symbol	Name	Function Class
Pola1	polymerase (DNA directed), alpha 1	within coordinates