rs8277620 SNP Detail

Summary

• ID
  rs8277620
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:92551175 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                          TTTTGTTT TGGGGACAAG TTTGATTTTT TTGTGGNGct
  ctggatagtt ttgaantcag atctacctac ctctgcctct agagtatagg aattaaaggt
  gtgtactacc atatcctgcc taGTCCAGCA TGTTTNGACA AATAACCNAT ACTTTTGGTA
  GTGTTAGTCT AGTTTACCTA AGCAATAGAA GAAAGTAAGT NTTTNTNTGG TATCAACAGT
  TGTGGGATTT TAGCCCCCCC CCCCCCTGGC ATAATATTTT TGTTTTGGGG ACAAGTTTGA
  TTTTTTTGTG GNGctctgga tagttttgaa ntcagatcta cctacctctg cctctagagt
  ataggaatta aaggtgtgta ctaccatatc ctgcctaGTC CAGCATGTTT NGACAAATAA
  CCNATACTTT TGGTAGTGTT AGTCTAGTTT ACCTAAGCAA TAGAAGAAAG TAAGTNTTTN
  TNTGGTATCA ACAGTTGTGG GATTTTAGCC CCCCCCCCCC CTGGCATAAT ATCAAAAGGG
  K
  GTTTTTGGCT TGCGTTTTTT AAAAAAGTGT TTATCTGTTT AAAATGAAAT ATCTTCAAAA
  G                                                                
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	CAST/EiJ	LG/J	NZB/BlNJ	SPRET/EiJ
ss12774955	Pola1_AN4745_7	ROCHEBIO	RPAMM	f	SNP	T	G	T		G	T
ss24756802	Pola1_AN4745_8	ROCHEBIO	RPAMM	f	SNP	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	CAST/EiJ	LG/J	NZB/BlNJ	SPRET/EiJ
rs8277620					SNP	T	G	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:92551175 () rs orientation: reverse

Symbol	Name	Function Class
Pola1	polymerase (DNA directed), alpha 1	within coordinates