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rs8281485 SNP Detail
Summary
  • ID
    rs8281485
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrMT:2256 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                           CCGCGGTATC
CTGACCGTGC AAAGGTAGCA TAATCACTTG TTCCTTAATT AGGGACTAGC ATGAACGGCT
AAACGAGGGT CCAACTGTCT CTTATCTTTA ATCAGTGAAA TTGACCTTTC AGTGAAGAGG
CTGAAATATA ATAATAAGAC GAGAAGACCC TATGGAGCTT AAATTATATA ACTTATCTAT
TTAATTTATT AAACCTAATG GCCCAAAAAC TATAGTATAA GTTTGAAATT TCGGTTGGGG
Y
GACCTCGGAG AATAAAAAAT CCTCCGAATG ATTATAACCT AGACTTACAA GTCAAAGTAA
AATCAACATA TCTTATTGAC CCAGATATAT TTTGATCAAC GGACCAAGTT ACCCTAGGGA
TAACAGCGCA ATCCTATTTA AGAGTTCATA TCGACAATTA GGGTTTACGA CCTCGATGTT
GGATCAGGAC ATCCCAATGG TGTAGAAGCT ATTAATGGTT CGTTTGTTCA ACGATTAAAG
TCCTACGTGA                                                       

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
C57BL/6J
SAMP1
SAMP8
ss13157363 NC_005089-2256 NCBI-GENBANK-VAR MOUSE-POP-NC_005089 f SNP T C C
SNP Consensus Information
SNP Consensus Type
C57BL/6J
SAMP1
SAMP8
rs8281485 SNP T C C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrMT:2256 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
mt-Nd1 mitochondrially encoded NADH dehydrogenase 1 495 bp upstream
mt-Nd2 mitochondrially encoded NADH dehydrogenase 2 1658 bp upstream
mt-Rnr1 mitochondrially encoded 12S rRNA 1232 bp downstream
mt-Rnr2 mitochondrially encoded 16S rRNA within coordinates
mt-Ti mitochondrially encoded tRNA isoleucine 1450 bp upstream
mt-Tl1 mitochondrially encoded tRNA leucine 1 420 bp upstream
mt-Tm mitochondrially encoded tRNA methionine 1589 bp upstream
mt-Tq mitochondrially encoded tRNA glutamine 1516 bp downstream
mt-Tv mitochondrially encoded tRNA valine 1163 bp downstream
Tssr160107 transcription start site region 160107 1758 bp downstream
Tssr160108 transcription start site region 160108 1653 bp downstream
Tssr160109 transcription start site region 160109 1150 bp downstream
Tssr160110 transcription start site region 160110 113 bp downstream
Tssr160111 transcription start site region 160111 94 bp downstream
Tssr160112 transcription start site region 160112 78 bp downstream
Tssr160113 transcription start site region 160113 45 bp downstream
Tssr160114 transcription start site region 160114 within coordinates
Tssr160115 transcription start site region 160115 24 bp upstream
Tssr160116 transcription start site region 160116 66 bp upstream
Tssr160117 transcription start site region 160117 89 bp upstream
Tssr160118 transcription start site region 160118 113 bp upstream
Tssr160119 transcription start site region 160119 135 bp upstream
Tssr160120 transcription start site region 160120 163 bp upstream
Tssr160121 transcription start site region 160121 487 bp upstream
Tssr160122 transcription start site region 160122 597 bp upstream
Tssr160123 transcription start site region 160123 792 bp upstream
Tssr160124 transcription start site region 160124 808 bp upstream
Tssr160125 transcription start site region 160125 857 bp upstream
Tssr160126 transcription start site region 160126 915 bp upstream
Tssr160127 transcription start site region 160127 1119 bp upstream
Tssr160128 transcription start site region 160128 1178 bp upstream
Tssr160129 transcription start site region 160129 1650 bp upstream
Tssr160130 transcription start site region 160130 1749 bp upstream
Tssr160131 transcription start site region 160131 1972 bp upstream
Tssr160216 transcription start site region 160216 1943 bp upstream
Tssr160217 transcription start site region 160217 1889 bp upstream
Tssr160218 transcription start site region 160218 1862 bp upstream
Tssr160219 transcription start site region 160219 1846 bp upstream
Tssr160220 transcription start site region 160220 1810 bp upstream
Tssr160221 transcription start site region 160221 1771 bp upstream
Tssr160222 transcription start site region 160222 1723 bp upstream
Tssr160223 transcription start site region 160223 1675 bp upstream
Tssr160224 transcription start site region 160224 1615 bp upstream
Tssr160225 transcription start site region 160225 1568 bp upstream
Tssr160226 transcription start site region 160226 1515 bp upstream
Tssr160227 transcription start site region 160227 1504 bp upstream
Tssr160228 transcription start site region 160228 1468 bp upstream
Tssr160229 transcription start site region 160229 1410 bp upstream
Tssr160230 transcription start site region 160230 1402 bp upstream
Tssr160231 transcription start site region 160231 1372 bp upstream
Tssr160232 transcription start site region 160232 1013 bp upstream
Tssr160233 transcription start site region 160233 990 bp upstream
Tssr160234 transcription start site region 160234 957 bp upstream
Tssr160235 transcription start site region 160235 908 bp upstream
Tssr160236 transcription start site region 160236 833 bp upstream
Tssr160237 transcription start site region 160237 801 bp upstream
Tssr160238 transcription start site region 160238 750 bp upstream
Tssr160239 transcription start site region 160239 712 bp upstream
Tssr160240 transcription start site region 160240 637 bp upstream
Tssr160241 transcription start site region 160241 603 bp upstream
Tssr160242 transcription start site region 160242 311 bp upstream
Tssr160243 transcription start site region 160243 247 bp upstream
Tssr160244 transcription start site region 160244 200 bp upstream
Tssr160245 transcription start site region 160245 147 bp upstream
Tssr160246 transcription start site region 160246 74 bp upstream
Tssr160247 transcription start site region 160247 2 bp downstream
Tssr160248 transcription start site region 160248 83 bp downstream
Tssr160249 transcription start site region 160249 104 bp downstream
Tssr160250 transcription start site region 160250 163 bp downstream
Tssr160251 transcription start site region 160251 210 bp downstream
Tssr160252 transcription start site region 160252 588 bp downstream
Tssr160253 transcription start site region 160253 765 bp downstream
Tssr160254 transcription start site region 160254 855 bp downstream
Tssr160255 transcription start site region 160255 897 bp downstream
Tssr160256 transcription start site region 160256 984 bp downstream
Tssr160257 transcription start site region 160257 1051 bp downstream
Tssr160258 transcription start site region 160258 1125 bp downstream
Tssr160259 transcription start site region 160259 1142 bp downstream
Tssr160260 transcription start site region 160260 1178 bp downstream
Tssr160261 transcription start site region 160261 1406 bp downstream
Tssr160262 transcription start site region 160262 1441 bp downstream
Tssr160263 transcription start site region 160263 1456 bp downstream
Tssr160264 transcription start site region 160264 1499 bp downstream
Tssr160265 transcription start site region 160265 1541 bp downstream
Tssr160266 transcription start site region 160266 1571 bp downstream
Tssr160267 transcription start site region 160267 1627 bp downstream
Tssr160268 transcription start site region 160268 1786 bp downstream
Tssr160269 transcription start site region 160269 1832 bp downstream
Tssr160270 transcription start site region 160270 1971 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory