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Batch Queries
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- • Batch Query
- Input a list of IDs or gene symbols and retrieve other database IDs and gene attributes (e.g. phenotypes, GO, expression data).
- • Gene Expression Batch Search
- Input a list of IDs or gene symbols and retrieve associated gene expression assay data. Search results include a tissue-by-gene matrix view to enable the comparison of expression patterns between genes.
- • MouseMine
- Powered by InterMine, MouseMine offers flexible querying, numerous predefined query templates, iterative refinement of results, and linking to other model organism Mines. MouseMine:
- • Multiple Genome Viewer (MGV)
- Compare genome features of de novo sequenced mouse strains.
- offers many useful "canned" queries, plus point-and-click query editing
- supports uploading and manipulating lists of objects
- allows any query result to be downloaded (text, xml, json) or forwarded to Galaxy
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Data Files for Download
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Public Reports via FTP
Tab Delimited Output from our Web Interface
- User-defined results for references, gene and SNP data are available in tab delimited format.
- You can modify the output format on the query form from Web to Tab-delimited.
- Query Forms with the tab-delimited option available are:
- MGI Batch Query
Download gene/marker data for a batch of IDs or symbols
- Genes and Markers Query Form
Search by symbol, location, gene ontology classification, or phenotype.
- Phenotypes, Alleles & Disease Models Query
Search for mutations or QTL based on phenotype, human disease, mutation type, gene, or genome location.
- Gene Expression Data Query
Search for detailed gene expression assay results.
- Mouse SNP Query Form
Search for SNPS by strain(s), SNP attributes, genomic position, or associated genes
- References
Search curated references by author, journal or text. The output to this form provides the text export option
FASTA Output from our Web Interface
- The FASTA format is available on reports where sequences are returned for a specific gene or when querying sequences.
- Click on the checkboxes next to each sequence to select it for FASTA download and click GO.
- From a gene detail page, FASTA is available for:
- Representative genomic, transcript, and polypeptide sequences
- All mouse sequences
- RefSeq transcript sequences for their human, rat, chimpanzee, rhesus macaque, dog, cattle, chicken, western clawed frog, and zebrafish homologs
- Protein sequences for human, rat, chimpanzee, rhesus macaque, dog, cattle, chicken, western clawed frog, and zebrafish homologs
- Mouse, human, and rat protein sequences for superfamily members.
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Analysis Tools